| UMIS(1) | User Commands | UMIS(1) |
NAME¶
umis - tools for processing UMI RNA-tag data
SYNOPSIS¶
umis [OPTIONS] COMMAND [ARGS]...
OPTIONS¶
- --help
- Show this message and exit.
Commands:¶
- add_uid
- Adds UID:[samplebc cellbc umi] to readname for...
- bamtag
- Convert a BAM/SAM with fastqtransformed read names to...
- cb_filter
- Filters reads with non-matching barcodes Expects...
- cb_histogram
- Counts the number of reads for each cellular barcode...
- demultiplex_cells
- Demultiplex a fastqtransformed FASTQ file into a...
- demultiplex_samples
- Demultiplex a fastqtransformed FASTQ file into a...
- fastqtransform
- Transform input reads to the tagcounts compatible...
- fasttagcount
- Count up evidence for tagged molecules, this...
- kallisto
- Convert fastqtransformed file to output format...
- mb_filter
- Filters umis with non-ACGT bases Expects formatted...
- sb_filter
- Filters reads with non-matching sample barcodes...
- sparse
- Convert a CSV file to a sparse matrix with rows and...
- subset_bamfile
- Subset a SAM/BAM file, keeping only alignments from...
- tagcount
- Count up evidence for tagged molecules
- umi_histogram
- Counts the number of reads for each UMI Expects...
- version
AUTHOR¶
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
| April 2019 | umis 1.0.3 |