Manpages of src:roary in Debian bookworm
- Bio::Roary(3pm)
- Bio::Roary::AccessoryBinaryFasta(3pm)
- Bio::Roary::AccessoryClustering(3pm)
- Bio::Roary::AnalyseGroups(3pm)
- Bio::Roary::AnnotateGroups(3pm)
- Bio::Roary::AssemblyStatistics(3pm)
- Bio::Roary::BedFromGFFRole(3pm)
- Bio::Roary::ChunkFastaFile(3pm)
- Bio::Roary::ClustersRole(3pm)
- Bio::Roary::CombinedProteome(3pm)
- Bio::Roary::CommandLine::AssemblyStatistics(3pm)
- Bio::Roary::CommandLine::Common(3pm)
- Bio::Roary::CommandLine::CreatePanGenome(3pm)
- Bio::Roary::CommandLine::ExtractProteomeFromGff(3pm)
- Bio::Roary::CommandLine::GeneAlignmentFromNucleotides(3pm)
- Bio::Roary::CommandLine::IterativeCdhit(3pm)
- Bio::Roary::CommandLine::ParallelAllAgainstAllBlastp(3pm)
- Bio::Roary::CommandLine::QueryRoary(3pm)
- Bio::Roary::CommandLine::Roary(3pm)
- Bio::Roary::CommandLine::RoaryCoreAlignment(3pm)
- Bio::Roary::CommandLine::RoaryPostAnalysis(3pm)
- Bio::Roary::CommandLine::RoaryReorderSpreadsheet(3pm)
- Bio::Roary::CommandLine::TransferAnnotationToGroups(3pm)
- Bio::Roary::CommandLine::UniqueGenesPerSample(3pm)
- Bio::Roary::ContigsToGeneIDsFromGFF(3pm)
- Bio::Roary::Exceptions(3pm)
- Bio::Roary::External::Blastp(3pm)
- Bio::Roary::External::Cdhit(3pm)
- Bio::Roary::External::CheckTools(3pm)
- Bio::Roary::External::Fasttree(3pm)
- Bio::Roary::External::GeneAlignmentFromNucleotides(3pm)
- Bio::Roary::External::IterativeCdhit(3pm)
- Bio::Roary::External::Mafft(3pm)
- Bio::Roary::External::Makeblastdb(3pm)
- Bio::Roary::External::Mcl(3pm)
- Bio::Roary::External::PostAnalysis(3pm)
- Bio::Roary::External::Prank(3pm)
- Bio::Roary::ExtractCoreGenesFromSpreadsheet(3pm)
- Bio::Roary::ExtractProteomeFromGFF(3pm)
- Bio::Roary::ExtractProteomeFromGFFs(3pm)
- Bio::Roary::FilterFullClusters(3pm)
- Bio::Roary::FilterUnknownsFromFasta(3pm)
- Bio::Roary::GeneNamesFromGFF(3pm)
- Bio::Roary::GroupLabels(3pm)
- Bio::Roary::GroupStatistics(3pm)
- Bio::Roary::InflateClusters(3pm)
- Bio::Roary::IterativeCdhit(3pm)
- Bio::Roary::JobRunner::Local(3pm)
- Bio::Roary::JobRunner::Parallel(3pm)
- Bio::Roary::JobRunner::Role(3pm)
- Bio::Roary::LookupGeneFiles(3pm)
- Bio::Roary::MergeMultifastaAlignments(3pm)
- Bio::Roary::OrderGenes(3pm)
- Bio::Roary::Output::BlastIdentityFrequency(3pm)
- Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL(3pm)
- Bio::Roary::Output::DifferenceBetweenSets(3pm)
- Bio::Roary::Output::EMBLHeaderCommon(3pm)
- Bio::Roary::Output::EmblGroups(3pm)
- Bio::Roary::Output::GroupMultifasta(3pm)
- Bio::Roary::Output::GroupsMultifastaNucleotide(3pm)
- Bio::Roary::Output::GroupsMultifastaProtein(3pm)
- Bio::Roary::Output::GroupsMultifastas(3pm)
- Bio::Roary::Output::GroupsMultifastasNucleotide(3pm)
- Bio::Roary::Output::NumberOfGroups(3pm)
- Bio::Roary::Output::QueryGroups(3pm)
- Bio::Roary::ParallelAllAgainstAllBlast(3pm)
- Bio::Roary::ParseGFFAnnotationRole(3pm)
- Bio::Roary::PostAnalysis(3pm)
- Bio::Roary::PrepareInputFiles(3pm)
- Bio::Roary::PresenceAbsenceMatrix(3pm)
- Bio::Roary::QC::Report(3pm)
- Bio::Roary::ReformatInputGFFs(3pm)
- Bio::Roary::ReorderSpreadsheet(3pm)
- Bio::Roary::SampleOrder(3pm)
- Bio::Roary::SequenceLengths(3pm)
- Bio::Roary::SortFasta(3pm)
- Bio::Roary::SplitGroups(3pm)
- Bio::Roary::SpreadsheetRole(3pm)
- Bio::Roary::UniqueGenesPerSample(3pm)
- create_pan_genome(1p)
- create_pan_genome_plots(1p)
- extract_proteome_from_gff(1p)
- iterative_cdhit(1p)
- pan_genome_assembly_statistics(1p)
- pan_genome_core_alignment(1p)
- pan_genome_post_analysis(1p)
- pan_genome_reorder_spreadsheet(1p)
- parallel_all_against_all_blastp(1p)
- protein_alignment_from_nucleotides(1p)
- query_pan_genome(1p)
- roary-pan_genome_reorder_spreadsheet(1p)
- roary-query_pan_genome(1p)
- roary-unique_genes_per_sample(1p)
- roary(1p)
- transfer_annotation_to_groups(1p)