NAME¶

ktImportRDPComparison - explore hierarchical metagenomic data with zoomable pie charts

DESCRIPTION¶

Creates a Krona chart from an RDP library comparison.

ktImportRDPComparison [options] rdp_comparison [name1] [name2]

rdp_comparison

RDP comparison result downloaded as text.

name

A name for each library to appear in the chart. The default is "Library [1/2]".

[-o <string>]

Output file name. [Default: 'rdp.comp.krona.html']

[-n <string>]

Name of the highest level. [Default: 'root']

[-d <integer>]

Maximum depth of wedges to include in the chart.

[-x <integer>]

Hue (0-360) for "bad" scores. [Default: '0']

[-y <integer>]

Hue (0-360) for "good" scores. [Default: '120']

[-u <string>]

URL of Krona resources to use instead of bundling them with the chart (e.g. "http://krona.sourceforge.net"). Reduces size of charts and allows updates, though charts will not work without access to this URL.