.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.8.
.TH RAGOUT-MAF2SYNTENY "1" "February 2019" "ragout-maf2synteny 2.1.1" "User Commands"
.SH NAME
ragout-maf2synteny \- Reference-Assisted Genome Ordering UTility
.SH SYNOPSIS
.B maf2synteny
[\fI\,-o out_dir\/\fR] [\fI\,-s simpl_params\/\fR] [\fI\,-m block_sizes\/\fR] \fI\,maf_file\/\fR
.SH OPTIONS
.SS "positional arguments:"
.TP
maf_file
path to maf file
.SS "optional arguments:"
.TP
\fB\-o\fR out_dir
path to the output directory [default = .]
.HP
\fB\-s\fR simpl_params path to a file with custom simplification parameters [default = not set]
.TP
\fB\-b\fR block_sizes
comma\-separated list of synteny block scales [default = 5000]
.SH AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.