.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.16.
.TH KTIMPORTMGRAST "1" "June 2021" "ktImportMGRAST 2.8" "User Commands"
.SH NAME
ktImportMGRAST \- explore hierarchical metagenomic data with zoomable pie charts
.SH DESCRIPTION
.IP
.PP
Creates a Krona chart from MG\-RAST organism or functional analyses.
.IP
.PP
ktImportMGRAST \e
.IP
[options] \e
mgrast_table_1[,name_1] \e
[mgrast_table_2[,name_2]] \e
\&...
.TP
mgrast_table
A table exported from MG\-RAST. It can be from organism or functional analysis, but all tables being imported should be consistent. By default, separate datasets will be created for each input (see [\-c]).
.TP
name
A name to show in the list of datasets in the Krona chart (if multiple input files are present and [\-c] is not specified). By default, the basename of the file will be used.
.IP
.TP
[\-o <string>]
Output file name. [Default: 'mg\-rast.krona.html']
.TP
[\-n <string>]
Name of the highest level. [Default: 'all']
.TP
[\-c]
Combine data from each file, rather than creating separate datasets within the chart.
.TP
[\-d <integer>]
Maximum depth of wedges to include in the chart.
.TP
[\-x <integer>]
Hue (0\-360) for "bad" scores. [Default: '0']
.TP
[\-y <integer>]
Hue (0\-360) for "good" scores. [Default: '120']
.TP
[\-p]
Use percent identity for average scores instead of log[10] e\-value.
.TP
[\-u <string>]
URL of Krona resources to use instead of bundling them with the chart (e.g. "http://krona.sourceforge.net"). Reduces size of charts and allows updates, though charts will not work without access to this URL.