.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.16.
.TH KTGETTAXINFO "1" "June 2021" "ktGetTaxInfo 2.8" "User Commands"
.SH NAME
ktGetTaxInfo \- explore hierarchical metagenomic data with zoomable pie charts
.SH DESCRIPTION
Description:
.IP
Retrieves taxonomy information for accessions or taxonomy IDs (as arguments
or the first field of <stdin>, separated by whitespace). If the input is a
number, it is assumed to be a taxonomy ID; otherwise it will be considered an
accession or sequence ID containing an accession in the fourth field of pipe
notation (e.g. "gi|12345|xx|ABC123.1|", ignoring fasta/fastq tag markers
[>,@]). If taxonomy information was not found for a given input line, the
output line will be only the taxonomy ID, which will be 0 if it was
looked up from an accession but not found.
.IP
Output fields are:
taxID  depth  parent  rank  name
.PP
Usage:
.IP
ktGetTaxInfo [IDs ...] [< ID_list] > tax_info
.IP
Command line example:
.IP
ktGetTaxInfo A00001.1 "gi|2|emb|A00002.1|" 9606
.IP
Fasta tag example:
.IP
grep ">" sequence.fasta | ktGetTaxInfo
.SH OPTIONS
.TP
[\-p]
Prepend tax info to the original lines (separated by tabs).
.TP
[\-a]
Append tax info to the original lines (separated by tabs).
.TP
[\-f] <integer>
Field of accessions. [Default: '1']
.TP
[\-tax <string>
Path to directory containing a taxonomy database to use.