.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.49.2.
.TH PARMED: "1" "August 2022" "parmed: Version 3.4.3" "User Commands"
.SH NAME
parmed: \- parameter file editor
.SH DESCRIPTION
usage: parmed [\-h] [\-v] [\-i FILE] [\-p <prmtop>] [\-c <inpcrd>] [\-O] [\-l FILE]
.IP
[\-\-prompt PROMPT] [\-n] [\-e] [\-s] [\-r]
[<prmtop>] [<script>]
.SS "positional arguments:"
.TP
<prmtop>
Topology file to analyze.
.TP
<script>
File with a series of ParmEd commands to execute.
.SS "options:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-v\fR, \fB\-\-version\fR
show program's version number and exit
.SS "Input Files:"
.TP
\fB\-i\fR FILE, \fB\-\-input\fR FILE
Script with ParmEd commands to execute. Default reads
from stdin. Can be specified multiple times to process
multiple input files.
.TP
\fB\-p\fR <prmtop>, \fB\-\-parm\fR <prmtop>
List of topology files to load into ParmEd. Can be
specified multiple times to process multiple
topologies.
.TP
\fB\-c\fR <inpcrd>, \fB\-\-inpcrd\fR <inpcrd>
List of inpcrd files to load into ParmEd. They are
paired with the topology files in the same order that
each set of files is specified on the command\-line.
.SS "Output Files:"
.TP
\fB\-O\fR, \fB\-\-overwrite\fR
Allow ParmEd to overwrite existing files.
.TP
\fB\-l\fR FILE, \fB\-\-logfile\fR FILE
Log file with every command executed during an
interactive ParmEd session. Default is parmed.log
.SS "Interpreter Options:"
.IP
These options affect how the ParmEd interpreter behaves in certain cases.
.TP
\fB\-\-prompt\fR PROMPT
String to use as a command prompt.
.TP
\fB\-n\fR, \fB\-\-no\-splash\fR
Prevent printing the greeting logo.
.TP
\fB\-e\fR, \fB\-\-enable\-interpreter\fR
Allow arbitrary single Python commands or blocks of
Python code to be run. By default Python commands will
not be run as a safeguard for your system. Make sure
you trust the source of the ParmEd command before
turning this option on.
.SS "Error Handling:"
.IP
These options control how ParmEd handles various errors and warnings that
appear occur during the course of Action execution
.TP
\fB\-s\fR, \fB\-\-strict\fR
Prevent scripts from running past unrecognized input
and actions that end with an error. In interactive
mode, actions with unrecognized inputs and failed
actions prevent any changes from being made to the
topology, but does not quit the interpreter. This is
the default behavior.
.TP
\fB\-r\fR, \fB\-\-relaxed\fR
Scripts ignore unrecognized input and simply skip over
failed actions, executing the rest of the script.
Unrecognized input in the interactive interpreter
emits a non\-fatal warning.