.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.15.
.TH PICOPORE-RENAME "1" "June 2020" "picopore-rename 1.2.0" "User Commands"
.SH NAME
picopore-rename \- renaming groups and datasets within Oxford Nanopore Technologies FAST5 files
.SH SYNOPSIS
.b picopore\-rename
[\-h] \fB\-p\fR PATTERN \fB\-r\fR REPLACEMENT [\-v] [\-y] [\-t INT]
[\-\-prefix STR] [\-\-skip\-root] [\-\-print\-every INT]
[input [input ...]]
.SH DESCRIPTION
A tool for renaming groups and datasets within Oxford Nanopore Technologies
FAST5 files
.SH OPTIONS
.SS "positional arguments:"
.TP
input
list of directories or fast5 files to shrink
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-p\fR PATTERN, \fB\-\-pattern\fR PATTERN
String or regex to replace
.TP
\fB\-r\fR REPLACEMENT, \fB\-\-replacement\fR REPLACEMENT
String or regex replacement for PATTERN
.TP
\fB\-v\fR, \fB\-\-version\fR
show version number and exit
.TP
\fB\-y\fR
skip confirm step
.TP
\fB\-t\fR INT, \fB\-\-threads\fR INT
number of threads (Default: 1)
.TP
\fB\-\-prefix\fR STR
add prefix to output files to prevent overwrite
.TP
\fB\-\-skip\-root\fR, \fB\-\-no\-skip\-root\fR
ignore files in root input directories for albacore
realtime compression (Default: \fB\-\-no\-skip\-root\fR)
.TP
\fB\-\-print\-every\fR INT
print a dot every approximately INT files, or \fB\-1\fR to
silence (Default: 100)
.SH AUTHOR
 This manpage was written by Andreas Tille for the Debian distribution and
 can be used for any other usage of the program.