.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.13.
.TH PXREVCOMP "1" "July 2021" "pxrevcomp 1.3" "User Commands"
.SH NAME
pxrevcomp \- manual page for pxrevcomp 1.3
.SH SYNOPSIS
.B pxrevcomp
[\fI\,OPTIONS\/\fR]... [\fI\,FILE\/\fR]...
.SH DESCRIPTION
Reverse complement sequences.
This will take fasta, fastq, phylip, and nexus formats from a file or STDIN.
Results are written in fasta format.
.SH OPTIONS
.TP
\fB\-s\fR, \fB\-\-seqf\fR=\fI\,FILE\/\fR
input sequence file, STDIN otherwise
.TP
\fB\-i\fR, \fB\-\-ids\fR=\fI\,IDS\/\fR
a comma sep list of ids to flip (NO SPACES!)
.TP
\fB\-g\fR, \fB\-\-guess\fR
EXPERIMENTAL: guess whether there are seqs that need to be
rev comp. uses edlib library on first seq
.TP
\fB\-p\fR, \fB\-\-pguess\fR
EXPERIMENTAL: progressively guess
.TP
\fB\-m\fR, \fB\-\-sguess\fR
EXPERIMENTAL: sampled guess
.TP
\fB\-o\fR, \fB\-\-outf\fR=\fI\,FILE\/\fR
output sequence file, STOUT otherwise
.TP
\fB\-h\fR, \fB\-\-help\fR
display this help and exit
.TP
\fB\-V\fR, \fB\-\-version\fR
display version and exit
.TP
\fB\-C\fR, \fB\-\-citation\fR
display phyx citation and exit
.SH CITATION
Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.
.SH AUTHOR
Written by Stephen A. Smith (blackrim)
.SH "REPORTING BUGS"
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues>
phyx home page: <https://github.com/FePhyFoFum/phyx>
.SH COPYRIGHT
Copyright \(co 2017\-2021 FePhyFoFum
License GPLv3