.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.13.
.TH PXFQFILT "1" "July 2021" "pxfqfilt 1.3" "User Commands"
.SH NAME
pxfqfilt \- manual page for pxfqfilt 1.3
.SH SYNOPSIS
.B pxfqfilt
[\fI\,OPTIONS\/\fR]...
.SH DESCRIPTION
Filter fastq files by mean quality.
Data can be read from a file or STDIN.
.SH OPTIONS
.TP
\fB\-m\fR, \fB\-\-mean\fR=\fI\,VALUE\/\fR
mean value under which seqs are filtered
.TP
\fB\-s\fR, \fB\-\-seqf\fR=\fI\,FILE\/\fR
input sequence file, STDIN otherwise
.TP
\fB\-o\fR, \fB\-\-outf\fR=\fI\,FILE\/\fR
output sequence file, STOUT otherwise
.TP
\fB\-h\fR, \fB\-\-help\fR
display this help and exit
.TP
\fB\-V\fR, \fB\-\-version\fR
display version and exit
.TP
\fB\-C\fR, \fB\-\-citation\fR
display phyx citation and exit
.SH CITATION
Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.
.SH AUTHOR
Written by Stephen A. Smith (blackrim)
.SH "REPORTING BUGS"
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues>
phyx home page: <https://github.com/FePhyFoFum/phyx>
.SH COPYRIGHT
Copyright \(co 2013\-2021 FePhyFoFum
License GPLv3