.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.48.5.
.TH NTHASH "1" "October 2022" "nthash 2.3.0" "User Commands"
.SH NAME
nthash \- Recursive hash function for hashing all possible k-mers in a DNA/RNA sequence
.SH SYNOPSIS
.B ntHash
\fI\,-k VAR -o VAR \/\fR[\fI\,-f VAR\/\fR] [\fI\,-h\/\fR] [\fI\,-s VAR\/\fR] [\fI\,--long\/\fR] [\fI\,--binary\/\fR] [\fI\,--verbose\/\fR] \fI\,files\/\fR
.SH DESCRIPTION
Unknown argument: \fB\-\-help\fR
.SS "Positional arguments:"
.TP
files
Input sequence files [nargs: 0 or more] [required]
.SS "Optional arguments:"
.HP
\fB\-v\fR, \fB\-\-version\fR prints version information and exits
.TP
\fB\-k\fR
k\-mer size [required]
.TP
\fB\-o\fR
Output file (for \fB\-f\fR collect) or directory path [required]
.TP
\fB\-f\fR
Output file organization (store hashes for each 'file', 'record', or 'collect' all hashes into a single file [default: "file"]
.TP
\fB\-h\fR
Number of hashes per k\-mer/seed [default: 1]
.TP
\fB\-s\fR
Input spaced seed patterns separated by commas (e.g. 1110111,11011011). Performs k\-mer hashing if no value provided.
.TP
\fB\-\-long\fR
Optimize file reader for long sequences (>5kbp)
.TP
\fB\-\-binary\fR
Output hashes in binary files (otherwise plain text)
.TP
\fB\-\-verbose\fR
Print progress to stdout
.SH AUTHOR
 This manpage was written by Nilesh Patra for the Debian distribution and
 can be used for any other usage of the program.